PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022129.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 332aa    MW: 35892.6 Da    PI: 4.4528
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022129.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64.1e-12178220754
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++ErrRR+r+N++++ Lr+++Pk      +K++  +iL  +++Y+k+L
  Do022129.1 178 MAERRRRKRLNDRLSMLRSIVPKI-----TKMDRTSILGDTIDYVKEL 220
                 79*********************7.....6****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.37171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-16176248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-13177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-15178238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9178220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-5184225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MELDEETFLD ELMSLRREAS TSAPWQVYPG GGGVMMSDLL FYGGEAGADA RGGGGGGGMD  60
LSPFQELAPM LPVATPHHTH EEFNFDYLSE VCNPYRSCGV AVPGEAAPGQ TLIAAPLHDA  120
MVEEETSGDK GNYYGGGGSP TFVFGGGAGE SSEMAAIRGL GGPHHRSKLH GAPSKNLMAE  180
RRRRKRLNDR LSMLRSIVPK ITKMDRTSIL GDTIDYVKEL TERIKVLEEE IGASPEDLNL  240
LNTLKDSFNS NNETMVRNST KIEICCPTNP GMLLSTVSAL EVLGLEMEQC VVSCFSDFGM  300
QASCLQVSDL IKGLFDSEYC LAMPFVCLQG WE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179186ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9647152e-81EU964715.1 Zea mays clone 281052 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985797.10.0PREDICTED: transcription factor bHLH61-like
TrEMBLK4AC630.0K4AC63_SETIT; Uncharacterized protein
STRINGSi036470m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10570.14e-50bHLH family protein